rs220908906 SNP Detail

Summary

• ID
  rs220908906
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:4541290 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGCAGTG AGTGTAGACC
  ATCCCAATGA GAGTTGACCA AGGCTGACAC GAACTGAGGT ACTTGTTTTG TTTTGCTTGC
  AACACAAAGG TGCTAATTAG TAGTATTTCA GATACTTGAA GAATATGAAC GGTGCTGGAA
  GAATTACAGA AGAAACAATC CTCCACATTG ATGTGCATTG TGTGTGATTT TTAAATTTGA
  S
  TTAGCAGTCC TCTTTCTCAT CTTATCCCCA ACTACAGGAA TGCAGGCCAC TTGCCCCAGG
  TTCTCTCTTC ATTAGATTCA GCATTCATTC TTTAACAGCC TCATTTTCCT TCTTGCCCAT
  GGTTCCAAAG AAGTCTTGTT TCTTGGACAA GCAGAAAAAT TGAATTGTAC CTATTTTGTA
  TATGTGAGAT GTTTAAATAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367230189	MGP_WTSI_6_4491290	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220908906					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367230189	MGP_WTSI_6_4491290	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4541290 () rs orientation: forward

Symbol	Name	Function Class
Col1a2	collagen, type I, alpha 2	mRNA-UTR
Tssr54733	transcription start site region 54733	1816 bp downstream
Tssr54734	transcription start site region 54734	1799 bp downstream
Tssr54735	transcription start site region 54735	1788 bp downstream
Tssr54736	transcription start site region 54736	1762 bp downstream
Tssr54737	transcription start site region 54737	1745 bp downstream
Tssr54738	transcription start site region 54738	1702 bp downstream
Tssr54739	transcription start site region 54739	1690 bp downstream
Tssr54740	transcription start site region 54740	1613 bp downstream
Tssr54741	transcription start site region 54741	1274 bp downstream
Tssr54742	transcription start site region 54742	748 bp downstream
Tssr54743	transcription start site region 54743	717 bp downstream
Tssr54744	transcription start site region 54744	705 bp downstream
Tssr54745	transcription start site region 54745	699 bp downstream
Tssr54746	transcription start site region 54746	670 bp downstream
Tssr54747	transcription start site region 54747	619 bp downstream
Tssr54748	transcription start site region 54748	611 bp downstream
Tssr54749	transcription start site region 54749	438 bp downstream
Tssr54750	transcription start site region 54750	429 bp downstream
Tssr54751	transcription start site region 54751	415 bp downstream
Tssr54752	transcription start site region 54752	368 bp downstream
Tssr54753	transcription start site region 54753	344 bp downstream
Tssr54754	transcription start site region 54754	235 bp downstream
Tssr54755	transcription start site region 54755	147 bp upstream
Tssr59718	transcription start site region 59718	555 bp upstream
Tssr59719	transcription start site region 59719	458 bp upstream