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rs220909942 SNP Detail
Summary
  • ID
    rs220909942
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr19:44385187 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCAGAAGAAA TCAGGTGGGT
AAGAGCTTCC TAGGCAGCAC TAGGCAGGCT GGGTGGCCAC AAAGCAAAGA AGGCATGGAA
GGTTCAAAAC CATGGGAAGC CAAGTTTCTA CACAATCCAA GGAGGAAACT AAAGCAATGG
ATGGAGCCAA CACCATGCGG ATCCCTGGCA GATGTTCCCC AAGGGCTTCA TCTGGAAATG
Y
ACCTCTTAGC AGCTACTTAC AGACACTGCC CCTCAACCTC ACTAGTTCCT GCCCAGCCAC
GAAAGAAACT GGCAACCCAG GCAACACCTC GGGTCCTTCG ATTATTTTCT AAGTGAAATA
GTTTCATGTT CCAAGTGAAG ATTTTGCTTA TATTTTCATA GTTTCACACC ATATCTGTCC
CCGACAAATG TCAGCTGTTT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402552106 MGP_WTSI_19_44471238 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220909942 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss402552106 MGP_WTSI_19_44471238 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44385187 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 407 bp proximal
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 257 bp proximal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 365 bp proximal
Rr548237 regulatory region 548237 1330 bp distal
Rr548238 regulatory region 548238 121 bp proximal
Rr548239 regulatory region 548239 1966 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 384 bp upstream
Tssr156606 transcription start site region 156606 322 bp downstream
Tssr156607 transcription start site region 156607 1 bp downstream
Tssr156608 transcription start site region 156608 393 bp upstream
Tssr156609 transcription start site region 156609 603 bp upstream
Tssr159447 transcription start site region 159447 1980 bp upstream
Tssr159448 transcription start site region 159448 1954 bp upstream
Tssr159449 transcription start site region 159449 1891 bp upstream
Tssr159450 transcription start site region 159450 1877 bp upstream
Tssr159451 transcription start site region 159451 1797 bp upstream
Tssr159452 transcription start site region 159452 1503 bp upstream
Tssr159453 transcription start site region 159453 1434 bp upstream
Tssr159454 transcription start site region 159454 1415 bp upstream
Tssr159455 transcription start site region 159455 1109 bp upstream
Tssr159456 transcription start site region 159456 990 bp upstream
Tssr159457 transcription start site region 159457 961 bp upstream
Tssr159458 transcription start site region 159458 927 bp upstream
Tssr159459 transcription start site region 159459 835 bp upstream
Tssr159460 transcription start site region 159460 799 bp upstream
Tssr159461 transcription start site region 159461 738 bp upstream
Tssr159462 transcription start site region 159462 706 bp upstream
Tssr159463 transcription start site region 159463 667 bp upstream
Tssr159464 transcription start site region 159464 637 bp upstream
Tssr159465 transcription start site region 159465 617 bp upstream
Tssr159466 transcription start site region 159466 599 bp upstream
Tssr159467 transcription start site region 159467 535 bp upstream
Tssr159468 transcription start site region 159468 289 bp upstream
Tssr159469 transcription start site region 159469 224 bp upstream
Tssr159470 transcription start site region 159470 210 bp upstream
Tssr159471 transcription start site region 159471 177 bp upstream
Tssr159472 transcription start site region 159472 151 bp upstream
Tssr159473 transcription start site region 159473 132 bp upstream
Tssr159474 transcription start site region 159474 110 bp upstream
Tssr159475 transcription start site region 159475 63 bp upstream
Tssr159476 transcription start site region 159476 45 bp upstream
Tssr159477 transcription start site region 159477 36 bp upstream
Tssr159478 transcription start site region 159478 15 bp upstream
Tssr159479 transcription start site region 159479 within coordinates
Tssr159480 transcription start site region 159480 22 bp downstream
Tssr159481 transcription start site region 159481 71 bp downstream
Tssr159482 transcription start site region 159482 171 bp downstream
Tssr159483 transcription start site region 159483 262 bp downstream
Tssr159484 transcription start site region 159484 296 bp downstream
Tssr159485 transcription start site region 159485 422 bp downstream
Tssr159486 transcription start site region 159486 429 bp downstream
Tssr159487 transcription start site region 159487 510 bp downstream
Tssr159488 transcription start site region 159488 527 bp downstream
Tssr159489 transcription start site region 159489 581 bp downstream
Tssr159490 transcription start site region 159490 683 bp downstream
Tssr159491 transcription start site region 159491 718 bp downstream
Tssr159492 transcription start site region 159492 769 bp downstream
Tssr159493 transcription start site region 159493 795 bp downstream
Tssr159494 transcription start site region 159494 815 bp downstream
Tssr159495 transcription start site region 159495 933 bp downstream
Tssr159496 transcription start site region 159496 1003 bp downstream
Tssr159497 transcription start site region 159497 1016 bp downstream
Tssr159498 transcription start site region 159498 1028 bp downstream
Tssr159499 transcription start site region 159499 1058 bp downstream
Tssr159500 transcription start site region 159500 1089 bp downstream
Tssr159501 transcription start site region 159501 1104 bp downstream
Tssr159502 transcription start site region 159502 1140 bp downstream
Tssr159503 transcription start site region 159503 1153 bp downstream
Tssr159504 transcription start site region 159504 1232 bp downstream
Tssr159505 transcription start site region 159505 1345 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory