rs220916899 SNP Detail

Summary

• ID
  rs220916899
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133853679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCTAGGC TCCAGCCACT
  CTCCATGGCT GCCTTCCAGA ACTGCTGCCC AATGCCTGCC CGGATCCAGG AGATCATAGT
  GGAGACACCT GCCTTGGCTT CTGAGCGGCA GAGGTGAGGG CGAGGCAGAG AGATGGGAGC
  AGGGCGGAGA GGAAAGGACC AGGGAGCTGG GGAGCGCTGA AGGCCTCTGG ATCTGCAGGA
  R
  CCAGGAGTCA CCTGACATGC CAATGCCTCT GCTCTCCATG CTTCGCATCA AGTCCGAGAA
  CGGAGAGCAG GCCTTCCTGC TGATGATGTG GCCTGAGGAT ACCATTGGCG ACGTGCGGAA
  ACTCTTAGCA CAGGCCAGGT GGGTATAGGG CAGGACTAGG GCTGCAGGGA GTTCCTGGCT
  CCACGGCCTG GCCTGATGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363332239	MGP_WTSI_4_133682283	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220916899					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363332239	MGP_WTSI_4_133682283	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133853679 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15028	CpG island 15028	1884 bp proximal
Rr367739	regulatory region 367739	1923 bp downstream
Rr601571	regulatory region 601571	1630 bp distal
Rr601574	regulatory region 601574	1750 bp distal
Sh3bgrl3	SH3 domain binding glutamic acid-rich protein-like 3	1038 bp downstream
Tssr39534	transcription start site region 39534	1810 bp downstream
Tssr39535	transcription start site region 39535	1167 bp upstream
Tssr39536	transcription start site region 39536	1250 bp upstream
Tssr39537	transcription start site region 39537	1540 bp upstream
Tssr43866	transcription start site region 43866	1259 bp downstream
Tssr43867	transcription start site region 43867	1319 bp downstream
Tssr43868	transcription start site region 43868	1355 bp downstream
Tssr43869	transcription start site region 43869	1430 bp downstream
Tssr43870	transcription start site region 43870	1583 bp downstream
Tssr43871	transcription start site region 43871	1631 bp downstream
Tssr43872	transcription start site region 43872	1661 bp downstream
Tssr43873	transcription start site region 43873	1684 bp downstream
Tssr43874	transcription start site region 43874	1714 bp downstream
Ubxn11	UBX domain protein 11	within coordinates