rs220917340 SNP Detail

Summary

• ID
  rs220917340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:45452536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCTCTGA CCCACCTTTC
  CAGTCCCTGA AAAAAAATAT ATATTTTAAG TTTTTATGTG TTTGCCTGCT TATATGTCTG
  TGCACCATTT GTATGCAGTG CCTGGAGGCC AGAGTAGAGC ATCAGATCTC CTGGAACTGG
  CATTACAGAT GGCCCTGTGC TACTATGTGG AAAGCAAATC TGGTTATCTG GAAAAGTAGC
  Y
  AGTGCTTTTA GCTGTAGAGC CATTGTTCTA ATTCCAACTT AAATTTTATT AAACCATTTT
  TGTCATAATT GAGGTTTTGT GTCTACCAGG TGTGGTAGTG AGTGTGGGAC AAAAGGGTTA
  AGAAAACCCA CCAGTCCCTG AACAAGAAAA CCCACTAATC TCTGAAGAGC AAAACCCACC
  AACCCCTGCG CTCACCCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380241397	MGP_WTSI_10_45296246	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220917340					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380241397	MGP_WTSI_10_45296246	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:45452536 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1519	CpG island 1519	1203 bp proximal
Gm3805	predicted gene 3805	1044 bp downstream
Hace1	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	1389 bp upstream
Rr224766	regulatory region 224766	1064 bp proximal
Tg(SRY-YFP,Tyr)TashTNpln	transgene insertion TashT, Nicolas Pilon	1389 bp proximal
Tssr93194	transcription start site region 93194	1371 bp upstream
Tssr93195	transcription start site region 93195	1476 bp upstream
Tssr97528	transcription start site region 97528	1660 bp downstream
Tssr97529	transcription start site region 97529	1681 bp downstream