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rs220919267 SNP Detail
Summary
  • ID
    rs220919267
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr11:21322393 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AATCCAAAAA CCTTAGGCAT
    CCAAATATCT CAGCTAAGAA AATAACTTTC TCCAAATGAA AAAAATTTCT AAAATAACAA
    ATGACGTCAG TTTAATAACG ACACTTGCTC TGGAGTTTTT GCTTAGACTC TACATCCTCT
    CTGAACAGTA GAGAAATTGT TCCAGCAGTG AATGAACTAT ATTTATCAGT CAGTGTAAGC
    W
    CTAAAACAGA ACCAAAGACC TGGGGCTCCT CATGTAAGTC AGCCTGCAAA AACTTACGTG
    CAACAAGGAA TCTTTAACTT TCCCAGGCTT ATTATATAAT AGAATGGCCA GTTATTTTTG
    ACTTCCACAG AAGATTAACA AGGGGAGAAA CGATCTTTAA ATCTAGCAAA AACATTTGGT
    AGTTCCTAAG AATTGGCATC                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss382665877 MGP_WTSI_11_21272396 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs220919267 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss382665877 MGP_WTSI_11_21272396 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:21322393 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi2630 CpG island 2630 630 bp distal
Gm12043 predicted gene 12043 within coordinates
Rr402440 regulatory region 402440 955 bp downstream
Rr443564 regulatory region 443564 1927 bp distal
Rr443565 regulatory region 443565 1922 bp distal
Rr443566 regulatory region 443566 1426 bp distal
Rr443567 regulatory region 443567 1557 bp distal
Rr443568 regulatory region 443568 702 bp distal
Tssr3440 transcription start site region 3440 1615 bp upstream
Tssr3441 transcription start site region 3441 1587 bp upstream
Tssr3442 transcription start site region 3442 1367 bp downstream
Tssr100572 transcription start site region 100572 1656 bp downstream
Tssr107064 transcription start site region 107064 1908 bp upstream
Tssr107065 transcription start site region 107065 1810 bp upstream
Tssr107066 transcription start site region 107066 1737 bp upstream
Tssr107067 transcription start site region 107067 1720 bp upstream
Tssr107068 transcription start site region 107068 1704 bp upstream
Tssr107069 transcription start site region 107069 1172 bp upstream
Tssr107070 transcription start site region 107070 1117 bp upstream
Ugp2 UDP-glucose pyrophosphorylase 2 1192 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/29/2025
MGI 6.24
The Jackson Laboratory