rs220921721 SNP Detail

Summary

• ID
  rs220921721
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:74112838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCTGTTG TCTGATCTGG
  GCACTGAAAC TGAGGCACAG AAGGAACCAG ACTCCTAATG AAGGTGGGGA TACCGTAACC
  CTCCTTTTGA CTAGAATCTC TTATCTCGTG AAGGGCTTGG GATTATCCCG GGGAGCCTTA
  CCTTTGCAGC CGAGTTGTTC TCATGGTCGC GGGCCTGGGG ATGGGGGTGA ACTGGAGACC
  Y
  TGGGGTCATT TATTCTTTTA CCGTTTTTCC TTCTCTCTGA CAGTGCTTTT AGGGCTGTCT
  CTTAGAGAAG CAGAATACTT TTAATAAGTT TCTTCTTTGA ACTTAATAGT TCAATAATAA
  TAATAATAAT AATAATAATA ATAATAATAA TAATAATAAT AAAGCAGCTT ACAGAAGTAG
  AGGAGATACT AAGATGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399003186	MGP_WTSI_17_74155183	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220921721					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399003186	MGP_WTSI_17_74155183	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:74112838 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9490	CpG island 9490	340 bp distal
Ehd3	EH-domain containing 3	within coordinates
Rr530824	regulatory region 530824	992 bp distal
Rr530825	regulatory region 530825	1182 bp distal
Rr530826	regulatory region 530826	430 bp proximal
Rr530827	regulatory region 530827	1495 bp proximal
Tssr145810	transcription start site region 145810	1004 bp downstream
Tssr145811	transcription start site region 145811	972 bp downstream
Tssr145812	transcription start site region 145812	942 bp downstream
Tssr145813	transcription start site region 145813	902 bp downstream
Tssr145814	transcription start site region 145814	887 bp downstream