rs220923864 SNP Detail

Summary

• ID
  rs220923864
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:152684922 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aggcCTCTT GATTGCTTAG GTGTGtgtgt
  gtgtacatgt gcgtgtgtga tgtgggtggg ggtggctacg tatgtcatga cgcacatgtg
  tcaatcaaag gacgactctg tggagttccc tccttccatt ttgacctgga tccagtgacc
  R
  accccaaatc tctgagattg cacagcaagt gcctttgtct gctgaactcg atctcacagc
  tccgcgggag cttcacctgc ttcttgttgt tgttgttgtt ttctaggaag ggtccctgtc
  ttagtcaggg tttctattcc tgcacaaaca                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068365	CHEV_1_154656301	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220923864					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152684922 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	within coordinates
Tssr9423	transcription start site region 9423	1381 bp downstream
Tssr9424	transcription start site region 9424	1345 bp downstream
Tssr9425	transcription start site region 9425	1295 bp downstream
Tssr9426	transcription start site region 9426	1273 bp downstream
Tssr9427	transcription start site region 9427	1255 bp downstream
Tssr9428	transcription start site region 9428	1237 bp downstream
Tssr9429	transcription start site region 9429	1212 bp downstream
Tssr9430	transcription start site region 9430	936 bp upstream
Tssr14234	transcription start site region 14234	858 bp upstream
Tssr14235	transcription start site region 14235	753 bp downstream
Tssr14236	transcription start site region 14236	1438 bp downstream