rs220925602 SNP Detail

Summary

• ID
  rs220925602
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137190123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGCAGTT GTGGTGACTT
  CACCTGTGGT GGTGACATCA TCAGTGTTTG TGATCTCAGC AGTGGTGGTG ACATCAGAAG
  TAGTTGTGAT TTCGGCAGTG GTTGTGACAT CAGCGGTGGT TGTGACATCA GCAGTGGTGG
  TGACTTCAGC CTTTGTGGTG GATGGGGAAC TGGATCTTTG CTGGTACTCC TGCCGTGGCC
  M
  TGCCTCACTG TTTTCCCCGT CTGTAAGTTA CAGATGTTAG AATTACTTGG AAGGAGAAAC
  TTCAATACAA AATGATTCCT TTCTCAGATG TATGCGGCAA GTGTGTCAGG CCCTGTCTAC
  CCCCTTCAGC CTTTCTTTTT CCTGTTCTTT TAATTTGTTA CTATTAGCGG TTGCACTGGA
  GCTCACAAAA CTCCACCTGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
ss366873499	MGP_WTSI_5_137633909	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	C	A	C	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NON/ShiLtJ	PL/J	PWK/PhJ	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ
rs220925602					SNP	A	A	A	A	A	A	A	C	A	C	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366873499	MGP_WTSI_5_137633909	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137190123 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1697	transcription start site region 1697	483 bp upstream
Tssr49319	transcription start site region 49319	319 bp downstream
Tssr49320	transcription start site region 49320	307 bp downstream
Tssr53954	transcription start site region 53954	389 bp upstream
Tssr53955	transcription start site region 53955	373 bp upstream
Tssr53956	transcription start site region 53956	354 bp upstream
Tssr53957	transcription start site region 53957	337 bp upstream
Tssr53958	transcription start site region 53958	282 bp upstream
Tssr53959	transcription start site region 53959	269 bp upstream
Tssr53960	transcription start site region 53960	203 bp upstream
Tssr53961	transcription start site region 53961	104 bp upstream
Tssr53962	transcription start site region 53962	86 bp upstream
Tssr53963	transcription start site region 53963	47 bp upstream
Tssr53964	transcription start site region 53964	7 bp upstream
Tssr53965	transcription start site region 53965	9 bp downstream
Tssr53966	transcription start site region 53966	877 bp downstream
Tssr53967	transcription start site region 53967	903 bp downstream