rs220930144 SNP Detail

Summary

• ID
  rs220930144
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36414071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCCTGG GCCTCGCGAA
  CGGCGGCAAG GGATGAGCCC CCTAGGGGCG CCCCGGGAGC GGGGTGGGGA GAGTGGGCCA
  CCGGGGCCCA GTCCTCGGAC GCGCCCCGGG GCCTGGGCTG CGGTGTTGAC GCGCCAACGG
  CAGCGAGGGC GCGTTCCCGC GTGTGAGGCA GCAACGAGGA GCGCGCTCCG CTACCGCGGC
  S
  GCCACGGAGC CGCGAGCGCG AGCCACGGAG GGGGTGGGCA GCGCGGGGCG CGCGCTGACG
  TCGCCGGGAG TCACGCACGG AGCGCCGGGT TACGCGCCGA CGTCTGGCTG CCACGACTCG
  CCGTGGCGGC GGCGAGCGGA TCCCGCTAGG GAAGGAGGAG AGAGAGGGAG AGAGAGAGAG
  CTGACGGGGG CTGTGAGTGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss400274441	MGP_WTSI_18_36440672	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs220930144					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400274441	MGP_WTSI_18_36440672	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36414071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9864	CpG island 9864	within coordinates
Gm58393	predicted gene, 58393	37 bp upstream
Pura	purine rich element binding protein A	79 bp upstream
Rr536081	regulatory region 536081	48 bp distal
Rr536082	regulatory region 536082	within coordinates
Rr536083	regulatory region 536083	90 bp proximal
Tssr150596	transcription start site region 150596	451 bp downstream
Tssr150597	transcription start site region 150597	51 bp upstream
Tssr150598	transcription start site region 150598	330 bp upstream
Tssr150599	transcription start site region 150599	371 bp upstream
Tssr150600	transcription start site region 150600	428 bp upstream
Tssr150601	transcription start site region 150601	447 bp upstream
Tssr150602	transcription start site region 150602	493 bp upstream
Tssr152929	transcription start site region 152929	29 bp upstream