rs220931930 SNP Detail

Summary

• ID
  rs220931930
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:121849797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCCCCA CCCCCGACAC
  CTCCCCCGCC CCGGGTCTGT TTCGCATCTC CGCGCCCTCC AGGCCCGCGT CAACCCCGTC
  CGCGTCCGCC AGCCCGGGTC CCATGCGTTC GTCCACCGCC GCCGCTCAGC GGCCCGCGGC
  GGGGGACCCC GAGCCGCGCC GCCCGGCGGG CTGGGCCGCG CGGCGCTCGC TCCCGCGGAC
  K
  GCGCGGCGCG GCGGGCGGGG CGGCGCGGTG GCGTATCCCT CCGCCGGCCC TCCCCCGCGC
  GGCCCCGGCG CCCCTCCCCG CGGGCCGCGC TCGCCACCCT GCGCCTCAGA CTGTTTTGGT
  AGCAACGGCC ACGGCGCGTC CCGGCCCGGC TCCCGGCGGC TGCTCGGTGT CTGCGGGCCT
  CCCCGCCCCT TCGTCGTTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SJL/J	WSB/EiJ
ss366502170	MGP_WTSI_5_122161743	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi5/Ianm	RIIIS/J	SJL/J	WSB/EiJ
rs220931930					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366502170	MGP_WTSI_5_122161743	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121849797 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700064N11Rik	RIKEN cDNA 1700064N11 gene			within coordinates
Atxn2	ataxin 2			Coding-Synonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi16531	CpG island 16531			within coordinates
Rr619651	regulatory region 619651			280 bp distal
Rr619652	regulatory region 619652			115 bp distal
Rr619653	regulatory region 619653			within coordinates
Rr619654	regulatory region 619654			1275 bp proximal
Rr619655	regulatory region 619655			1733 bp proximal
Tssr48591	transcription start site region 48591			51 bp upstream
Tssr48592	transcription start site region 48592			174 bp upstream
Tssr48593	transcription start site region 48593			305 bp upstream
Tssr48594	transcription start site region 48594			334 bp upstream
Tssr48595	transcription start site region 48595			733 bp upstream
Tssr53053	transcription start site region 53053			255 bp upstream