rs220938687 SNP Detail

Summary

• ID
  rs220938687
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:142064561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCCTGCT TATGAAACAA
  CTTCTGTGTC TCTTCCCCAG ACTTACTGCT CCTAAGATCC CGGAAGGGGA GAAAGTAGAC
  TTTGATGTAA GTTTATGGGG CCCAGAACAC CCTCATCCCA AACTCTAGCC TTTGAACTTC
  ATAGGCTTCA GGTCATGTCT TCTCAAGCAG CCAGACCCAA GGCAGGCCAA CTCTAGGCCA
  Y
  ACTCCACTAA TTCGCTCCTA GACCCCAGGA AGTCAACATC CCTTCTTATT CCCTCCATAC
  ATTCTTGTAC CCACAAACTC ATCCACTCAT CTGCCCAGCC CGTCTCTCAA CTGTCTCATT
  CATCTGTCCA CTTATATGTT CAAGCACTCA TCCACGTATG CAGCAAATTA ATCTCACGGT
  TTCCTCTCTG CCAGACCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373452247	MGP_WTSI_7_149696729	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220938687					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373452247	MGP_WTSI_7_149696729	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142064561 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr658204	regulatory region 658204			56 bp distal
Tnnt3	troponin T3, skeletal, fast			Intron
				Noncoding-Transcript-Variant
Tssr2457	transcription start site region 2457			691 bp upstream
Tssr70197	transcription start site region 70197			899 bp downstream
Tssr70198	transcription start site region 70198			149 bp downstream
Tssr70199	transcription start site region 70199			447 bp upstream
Tssr70200	transcription start site region 70200			513 bp upstream
Tssr70201	transcription start site region 70201			650 bp upstream
Tssr70202	transcription start site region 70202			1209 bp upstream
Tssr70203	transcription start site region 70203			1228 bp upstream
Tssr70204	transcription start site region 70204			1423 bp upstream
Tssr70205	transcription start site region 70205			1442 bp upstream
Tssr75809	transcription start site region 75809			1247 bp downstream
Tssr75810	transcription start site region 75810			1303 bp downstream
Tssr75811	transcription start site region 75811			1457 bp downstream