rs220940198 SNP Detail

Summary

• ID
  rs220940198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46384023 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCACGGAC CCTTCCCGGG
  CTACAGCTCT TTCCTTTGTC TACCCTCAAA TTCTCCATTA CACGGATGTT GGCTGGCCGC
  CCTGCCTTCA AACTATGGAT GTGAGGAGGA CGCGGGCGGC GGCAGCTGAA CCCGCCTGAC
  AGGCCGAGCC AGTGACAAAG AGCTGGCGGC CTAGGCTGAA ACCGCGGAAA CAATCCTTCC
  Y
  GGAGGAGAAC ACAGTCCCTT TAAAGATAGG AAAGATGCTA CTCACGTTGT CGATCACAAC
  AGGCTGGTTG GCGATCACAT CGTAGGACTC CATGGCAGAG GAATCTTTCC CTCCGAGGAA
  GGAACTGCCA GCCCGGTCCG CAGCAAACGC CACTGACACG CATGCGCAGT CTAGTCGCCG
  GTACTGGGCA TCCAGGGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402595847	MGP_WTSI_19_46470074	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220940198					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402595847	MGP_WTSI_19_46470074	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46384023 () rs orientation: forward

Symbol	Name	Function Class
Actr1a	ARP1 actin-related protein 1A, centractin alpha	within coordinates
Cpgi11001	CpG island 11001	within coordinates
Cpgi11002	CpG island 11002	1106 bp proximal
Gm59146	predicted gene, 59146	within coordinates
Rr405999	regulatory region 405999	244 bp downstream
Rr406000	regulatory region 406000	99 bp upstream
Rr406001	regulatory region 406001	1042 bp upstream
Rr548727	regulatory region 548727	481 bp distal
Rr548728	regulatory region 548728	within coordinates
Rr548729	regulatory region 548729	144 bp proximal
Rr548730	regulatory region 548730	822 bp proximal
Rr548731	regulatory region 548731	1157 bp proximal
Rr548732	regulatory region 548732	1265 bp proximal
Rr548733	regulatory region 548733	1977 bp proximal
Sufu	SUFU negative regulator of hedgehog signaling	1312 bp upstream
Tssr156751	transcription start site region 156751	219 bp downstream
Tssr156752	transcription start site region 156752	191 bp downstream
Tssr156753	transcription start site region 156753	1301 bp upstream
Tssr156754	transcription start site region 156754	1425 bp upstream
Tssr159650	transcription start site region 159650	138 bp downstream