rs220955979 SNP Detail

Summary

• ID
  rs220955979
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136378062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGATC AGAAACAGTA TCTTATGCAG CAGAGCACTT
  AGCTAGAGTG CAAAGCAATC AAGTCATTTG CTCCAGGAAC ACTTAGGTGA AAGTAACCCA
  GCGCCCTCCC TAAGACATGA TCCATGTTCT TTGGAGCTTT AGAAAGGATA CTCGCTCCTA
  Y
  GTTTGCTCAG ATTTTAAAGT TTTGAGTTGT GTTGTGCTGT GCTGTGTGTG CGTGCGCGCG
  TGCGTGCGTG TGTGTTATGT TTTCTTTTGT GAGAGAATAA AATATTTTCT CTCCTTTTGG
  TTATGTTGGA ACCATTCCTA CTTAAAAGTA GGATTCATAG AGCCGTCAAA ATAAAGATGG
  AATAGGAAAA GCTCTGTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359865520	MGP_WTSI_3_136335265	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220955979					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359865520	MGP_WTSI_3_136335265	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136378062 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13862	CpG island 13862	within coordinates
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	within coordinates
Rr398057	regulatory region 398057	1199 bp downstream
Rr585837	regulatory region 585837	1521 bp distal
Rr585838	regulatory region 585838	within coordinates
Rr585839	regulatory region 585839	1817 bp proximal
Tssr31867	transcription start site region 31867	1994 bp downstream
Tssr31868	transcription start site region 31868	1875 bp downstream
Tssr31869	transcription start site region 31869	1862 bp downstream
Tssr31870	transcription start site region 31870	1827 bp downstream
Tssr31871	transcription start site region 31871	1774 bp downstream
Tssr31872	transcription start site region 31872	1718 bp downstream
Tssr31873	transcription start site region 31873	1699 bp downstream
Tssr31874	transcription start site region 31874	1573 bp downstream
Tssr31875	transcription start site region 31875	1477 bp downstream
Tssr31876	transcription start site region 31876	1427 bp downstream
Tssr31877	transcription start site region 31877	795 bp upstream