rs220957155 SNP Detail

Summary

• ID
  rs220957155
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98938780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGCTGA GCCTCAGCTC
  TAAGCTGAGC GTGATCTATC AGCTGCTTAT CAGACTAGTT CTTCCTGAAG CTGGGGGGAA
  CGGGGTGGGG CGCTAGCTAG GATGACAACC AGATGTCTGT ATTGACCACA GTGCATGATT
  GGAGAAAATT GGACAGCCAG GTAAGGGGGG GGGGGGTCAA ATAAATCTGT TTCCGGCTAC
  Y
  ATGACATCCT AGAACACCTG AAGGGTTCAT TTTCCAAGCC TGCATTTCCC ATTAAAACTG
  CCCCCAAAGA AAGCCCATTT TCAAAAGCCC AAAAGCTTTC AAAACGACCT GGTGGAGCCT
  GAAACCCCTG CCCCCCACTC CCCAGCAGCC ACCCCTTAGC CAGGAGCAGC CCTTGCCAAT
  TCCCTACGTA AGCCTTTCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325079646	CHEV_15_98871330	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220957155					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98938780 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7689	CpG island 7689	529 bp distal
Gm41399	predicted gene, 41399	337 bp upstream
Gm62755	predicted gene, 62755	within coordinates
Rr509290	regulatory region 509290	371 bp distal
Rr509291	regulatory region 509291	393 bp distal
Rr509292	regulatory region 509292	102 bp proximal
Rr509293	regulatory region 509293	1553 bp proximal