rs220959261 SNP Detail

Summary

• ID
  rs220959261
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45018952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGTGAAAG CAGCCACTGT
  GGCCTGGAAG AGAGAAGACG CCTCAATGAG AGAGACCCTC TTTGAGACAT GGGCACTCCA
  GCCAGCGTAG CCGCAAAGAT CAAGTAGGGG AACCCTGACA CAGCTCAACA GGAGGCTACC
  CTATACTGAC TCCGACCTGT GAGAACCCTT GCTTTCTTCC GAAAGTCAGG GAGAAGGGCA
  K
  CCTTAGTACT TAACACCTGC CAATCTTGTT CTCAGACAAA TGGAAACAAG TGCCCCCCCC
  ACCTCGGGGG TGGGGTGGGG TGATAGGGAT CAGGTGTAAA TCTTGAGTCT GCAGGCAGTA
  ATAAGTAATA AGCACTGCAG TTTGGAAAGG TGTCCCTGTT CACAACATCC AACAGGATTG
  CCTTTTAGGG TCATCTTACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371175716	MGP_WTSI_7_52624898	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220959261					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371175716	MGP_WTSI_7_52624898	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45018952 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19049	CpG island 19049	1656 bp distal
Cpgi19050	CpG island 19050	317 bp proximal
Gm45619	predicted gene 45619	824 bp downstream
Gm71276	predicted gene, 71276	1796 bp downstream
Lin7b	lin-7 homolog B, crumbs cell polarity complex component	within coordinates
Mtag2	metastasis associated gene 2	1580 bp downstream
Rr400311	regulatory region 400311	999 bp upstream
Rr646422	regulatory region 646422	1341 bp distal
Rr646423	regulatory region 646423	1045 bp proximal
Rr646424	regulatory region 646424	1103 bp proximal
Rr646425	regulatory region 646425	1172 bp proximal
Tssr72377	transcription start site region 72377	1031 bp downstream