rs220959812 SNP Detail

Summary

• ID
  rs220959812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:36005731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGCAGA AGGCATCAAA
  TAACCTGTCA CTGGAGTTAC AGTTCATGAG CTACCTGAAG GAGTGCTGCA AACTAACCCT
  GGATCCTTGG CAATATCTGT TCTTAACTGC TGAGCCATCC TTTAGGCTTC TAAATAGATA
  TTACTATAGT GGGATGGACA TTAAAAACCT CAAGTAACTG TGGTAATTTG AGGATGTTAG
  R
  CCCATGGTAA GTAGCATTAT TAGGAGGTAG GTGTGGCTTT GTAGGAGTAA ATATGTCACT
  GGGAGGGTGG GCTTTGAGGT CCTATGCTTA GGTTCTGCCT AGTGCAATAG GGAGCTTCTT
  CCTAGCTGCC TGTGGAAGAA AGTCTCTCCT GGTTGCCTTT ATCATTCTTA CAATGTTTTG
  GTGGGGAAAT GGGGCTGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321084819	CHEV_4_35952764	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220959812					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:36005731 () rs orientation: forward

Symbol	Name	Function Class
Gm12369	predicted gene 12369	1585 bp upstream
Lingo2	leucine rich repeat and Ig domain containing 2	within coordinates
Tssr41223	transcription start site region 41223	273 bp downstream