rs220969749 SNP Detail

Summary

• ID
  rs220969749
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127583192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTAAAT AGAAGCCCTC
  TCCTACCTCT CTCCACAGCT GCCTTCTGTA TTTCCATCCC AACCTCCTTG AACTTCGGAA
  ATTAGTGTCC GGGTATCCAG TCGGTCCTCT GAAAGACCCT CACGAGGCTG TTGCCCCTGT
  CACCACTCAG CACTAGGTGT TGGGCGAAGA AAGGTTGGTT AGCCGGAAGT GACAGGTGAG
  R
  AGGCTTCTGG ACGGCTTGTG CGCAGGGTGG CAGCATCCCG AGGAAGGTTC CAATCCTGTC
  TGGCTGGACT CTCATCCGCT CCCCACGCCT CGGGTTGAGC AGAGAGTAGC CACTGCCTCC
  CAAGGCCCGA GATCAGGCGC ACATTCTTAG GGTCCCCAAC GAGTCCTCCA ACTGCCTGCT
  GGTCCACCAC CCCACAGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359647218	MGP_WTSI_3_127492461	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220969749					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359647218	MGP_WTSI_3_127492461	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127583192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	within coordinates
Cpgi13801	CpG island 13801	1095 bp proximal
Gm56817	predicted gene, 56817	within coordinates
Gm65064	predicted gene, 65064	1750 bp downstream
Gm65225	predicted gene, 65225	850 bp downstream
Rr584859	regulatory region 584859	1229 bp distal
Rr584860	regulatory region 584860	within coordinates
Rr584861	regulatory region 584861	255 bp proximal
Rr584862	regulatory region 584862	380 bp proximal
Rr584863	regulatory region 584863	704 bp proximal
Rr584864	regulatory region 584864	1272 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	341 bp downstream
Tssr31595	transcription start site region 31595	329 bp downstream
Tssr31596	transcription start site region 31596	296 bp downstream
Tssr31597	transcription start site region 31597	256 bp downstream
Tssr31598	transcription start site region 31598	233 bp downstream
Tssr31599	transcription start site region 31599	259 bp upstream
Tssr31600	transcription start site region 31600	323 bp upstream
Tssr31601	transcription start site region 31601	357 bp upstream
Tssr31602	transcription start site region 31602	398 bp upstream
Tssr31603	transcription start site region 31603	443 bp upstream
Tssr31604	transcription start site region 31604	560 bp upstream
Tssr31605	transcription start site region 31605	1059 bp upstream
Tssr31606	transcription start site region 31606	1257 bp upstream
Tssr31607	transcription start site region 31607	1495 bp upstream
Tssr31608	transcription start site region 31608	1563 bp upstream
Tssr31609	transcription start site region 31609	1614 bp upstream
Tssr31610	transcription start site region 31610	1723 bp upstream
Tssr31611	transcription start site region 31611	1831 bp upstream
Tssr35598	transcription start site region 35598	199 bp downstream
Tssr35599	transcription start site region 35599	283 bp downstream
Tssr35600	transcription start site region 35600	300 bp downstream
Tssr35601	transcription start site region 35601	326 bp downstream
Tssr35602	transcription start site region 35602	658 bp downstream