rs220969900 SNP Detail

Summary

• ID
  rs220969900
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4641872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAAGCCA AGGGCTAATT
  GAAGAGTTAA GAAAACACCG TGAGAGCAAG AAAACCCTGT TTATCACCAT CAATGTTTGC
  TAAATTCCTC CTAAGAGTTG GTTGTCCAGT TCAGTTGGCC CTGAGCATCT CCGCAATCTC
  TTTCAAGTCA GACTTTCTAT CTGCATCAGC CCCAACAGGG GTCAGTGAAG CCTGGGGTCA
  K
  CTGATCTACA CATATCTCTC ACATTTCAAT TGAAATCATA GGGATACTAA TGTTTGAAAA
  CATCCATTTA TTTATGGGAT TTTTAAAAAA CAATTTTTAT ATAGCCTAGA CTGACCTCAA
  ATTCACAATC CTTCTCAGCA GTCAGACTGA TGCGACTCGT TCTCTGTGTG CAGGGGTTAC
  AGGCACGCAC CAGTTTACGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384997204	MGP_WTSI_12_4598678	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220969900					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384997204	MGP_WTSI_12_4598678	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4641872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4378	CpG island 4378	701 bp proximal
Gm3625	predicted gene 3625	within coordinates
Itsn2	intersectin 2	920 bp upstream
Rr256467	regulatory region 256467	129 bp proximal
Rr265387	regulatory region 265387	328 bp proximal
Tssr3767	transcription start site region 3767	1926 bp upstream
Tssr112557	transcription start site region 112557	757 bp upstream
Tssr112558	transcription start site region 112558	778 bp upstream
Tssr112559	transcription start site region 112559	921 bp upstream
Tssr112560	transcription start site region 112560	1028 bp upstream
Tssr112561	transcription start site region 112561	1120 bp upstream
Tssr112562	transcription start site region 112562	1264 bp upstream
Tssr112563	transcription start site region 112563	1988 bp upstream
Tssr115637	transcription start site region 115637	639 bp downstream
Tssr115638	transcription start site region 115638	1814 bp downstream
Tssr115639	transcription start site region 115639	1830 bp downstream
Tssr115640	transcription start site region 115640	1865 bp downstream
Tssr115641	transcription start site region 115641	1904 bp downstream
Tssr115642	transcription start site region 115642	1920 bp downstream