rs220972206 SNP Detail

Summary

• ID
  rs220972206
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142014398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAGACATA GCTACTCTCA GGTCTATGGA
  CCAGAGTTGC AAGGAGTAGC CTTACTCACC TCTACCCTCA GCCCTTTTCT GTCATTCCAG
  GAGGCTATAG CTTGCTTGCT CAACACTTCC TGATGAGTGG TTTGGGTTTA GTTGGTTTTT
  K
  GTTttttgtt tttttgtttt gttttgtttt gttttAACTC TTCTTCTGTT GCAGCAACAT
  AGGAAAAAAA AAAAAAAAAC CCAAGCCCCA TAGGTTTCAA ACCTCAACCT GCTACAGGAA
  GGAGGAAGTG AAACCTGGGG CGGGAAGGGT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322471348	CHEV_7_149646566	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220972206					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142014398 () rs orientation: forward

Symbol	Name	Function Class
D430042D18Rik	Riken cDNA D430042D18 gene	within coordinates
Lsp1	lymphocyte specific 1	185 bp upstream
Rr154799	regulatory region 154799	1798 bp distal
Rr166987	regulatory region 166987	2 bp proximal
Rr400723	regulatory region 400723	within coordinates
Tssr2454	transcription start site region 2454	822 bp downstream
Tssr70170	transcription start site region 70170	162 bp upstream
Tssr70171	transcription start site region 70171	173 bp upstream