rs220972335 SNP Detail

Summary

• ID
  rs220972335
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:18061577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGATGCCC CGCGCGGGCC
  GCGCTCTTGT GGAGCCGGAG CCCTTCCTGC TCCTCCAAGC CCGGCTCGCG GCCCCTCCCC
  CTGCGCCGCC AGCCCCTCCC CCTGCGCCGA GCCCCGCGGG AGGATTCTCC GCCGGGGAAC
  CCCCGCCCCG CCCCGCCCCG CCCCGCCCCC ACGCGGGCCC GGGCTGCGGA GACTGCGGCC
  R
  GCCAGGCCGG CCGGGCGGGG TGCTGGGCGC TGCGGGGCCG CGGGGGCGGG GAGGGCCCGG
  GGCGGCGGGA GGCCGGGCCC GCGGCCCAGC CTAGGCCTGG ACCTGTTGAC TGCCATTGGC
  CCGCTCGTCC CGCGCCCTCT CCTTGGCCGC GCCGCCCCAA CCCTTCCGCA GAATCCGGGG
  GAGGAAACGG GGTGGCTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss353244067	MGP_WTSI_2_17978393	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs220972335					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353244067	MGP_WTSI_2_17978393	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18061577 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1810059C17Rik	RIKEN cDNA 1810059C17 gene			within coordinates
Cpgi11234	CpG island 11234			within coordinates
Gm57467	predicted gene, 57467			809 bp downstream
Mir7655	microRNA 7655			1080 bp upstream
Mllt10	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10			Intron
				Noncoding-Transcript-Variant
Rr396788	regulatory region 396788			860 bp downstream
Rr552291	regulatory region 552291			1142 bp distal
Rr552292	regulatory region 552292			212 bp distal
Rr552293	regulatory region 552293			within coordinates
Rr552294	regulatory region 552294			1391 bp proximal
Tssr16357	transcription start site region 16357			1564 bp downstream
Tssr16358	transcription start site region 16358			1545 bp downstream
Tssr16359	transcription start site region 16359			1033 bp downstream
Tssr16360	transcription start site region 16360			362 bp upstream
Tssr22782	transcription start site region 22782			776 bp upstream