rs220978107 SNP Detail

Summary

• ID
  rs220978107
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28948535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTAAACA TAACAGATTA
  GTGCTTAAGC AGCAGTTTAC CTCATAGTCG GCAAGGCTCG GGGCTGGAAG CTAGGCATAG
  GCAGGGAGAG AGCCCCAGTA CAGAGATGGT CTGCTTCCTG CTTCTAGTCT TGGCTCTCCA
  TGTCTGAATA TAAGACCTCC AATTTGGGAT ATGGCTTCAC CATGTGACTT TCGGGAACAT
  M
  AACATTAGTT CTAAGCTAGG TACTGTAAGC CCACTGCTCA GGAGACTGGG GCAGGGGGAT
  TGAAGACTCT ATCATAGCCT GGGCTACACA GCATAAGAGT GCTGGGCTTG GTGACACACA
  CCTTTAATTC TAACACTCAG GAGGCAGAGG CAAGTTGAGT TCAAGGCCAG CCTGGCCTTA
  CAGAGTGAGT TCTGTGCCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370878001	MGP_WTSI_7_30034129	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220978107					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370878001	MGP_WTSI_7_30034129	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28948535 () rs orientation: forward

Symbol	Name	Function Class
2200002D01Rik	RIKEN cDNA 2200002D01 gene	643 bp upstream
Cpgi18753	CpG island 18753	924 bp distal
Gm73451	predicted gene, 73451	925 bp downstream
Rr644523	regulatory region 644523	1485 bp distal
Rr644524	regulatory region 644524	1545 bp distal
Rr644525	regulatory region 644525	154 bp distal
Rr644526	regulatory region 644526	1713 bp proximal
Tssr65618	transcription start site region 65618	1440 bp downstream
Tssr71635	transcription start site region 71635	1972 bp upstream
Tssr71636	transcription start site region 71636	1365 bp upstream
Tssr71637	transcription start site region 71637	1171 bp upstream
Tssr71638	transcription start site region 71638	1138 bp upstream
Tssr71639	transcription start site region 71639	686 bp upstream
Tssr71640	transcription start site region 71640	642 bp upstream
Tssr71641	transcription start site region 71641	577 bp upstream
Yif1b	Yip1 interacting factor homolog B (S. cerevisiae)	1513 bp downstream