rs220985900 SNP Detail

Summary

• ID
  rs220985900
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70989892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACTCAGC TCAGCAGTCT
  AGACTGGGTC ACTGGATAGT CCCGGTGTTA GCAGTATGCT AGGGTGCAAA GGACCGACCC
  GGCAAAATCG CAGGGTTTCC AGGCAGCGAT TCCACCATGC ACATCAGAGT TATCACTGCA
  GCTTCGTTCG GCACCGGGAG GTGGAGTGGC AGTGGTGGCG GGGGGCGGCA AAGCACCCGC
  M
  GCAACCAAGG GACAGCAGGG AGGAGGGTAG AGAAGGAGAG GGCAGGACTA GGGAGGGCAA
  AGGAGAGGAG AGGGGAGGGG ATAGAGGAGG GAGTAAAGCA GGGAGGAGGG GTACCAGGAG
  GAGGAGGAGG ATAAGGGAGG AGTGGCAGGG AGAGGAGATG AAGCAGACTC ATGGTAAGTA
  CTGGGCATCC TTCACGCCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324417478	CHEV_13_70980651	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220985900					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70989892 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Cpgi5821	CpG island 5821	within coordinates
Gm36529	predicted gene, 36529	within coordinates
Rr482298	regulatory region 482298	1618 bp distal
Rr482299	regulatory region 482299	1313 bp distal
Rr482300	regulatory region 482300	1386 bp distal
Rr482301	regulatory region 482301	1113 bp distal
Rr482302	regulatory region 482302	1063 bp distal
Rr482303	regulatory region 482303	30 bp distal
Rr482304	regulatory region 482304	28 bp proximal
Tssr123158	transcription start site region 123158	57 bp upstream
Tssr123159	transcription start site region 123159	19 bp upstream
Tssr123160	transcription start site region 123160	within coordinates
Tssr123161	transcription start site region 123161	17 bp downstream