rs220987849 SNP Detail

Summary

• ID
  rs220987849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:3284462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCACTGC ATCCCATGTG
  GGATGTTCAC TGCATCTCAG GTAAGATGGT CACTGCATCT CAGGAGGGAT GGATACTACA
  TCTCAGGTGG GGTGGTCACT GCATCACAGG TGGGATTGTC ATAGTATCTC ACGTGAGATA
  GTCACAACAT CTCAGGTGGC ATGGTCACTG CATCTCAGGT GGGACAGTCA CTGCATCACT
  R
  GTGGGATTGT CATCCCATCT CACTTGGGAT GGTCACAACT TCACACGTGG GATAGTCACT
  GAATCTTAGG TGGATGGTCA CTGCATTTCT GTTAAGACGA CTCTCTACAT CTCAGGTTGG
  ATAGTCATTG CATCCCATGT GGGATTTTCA CTGTATCTCA GGTAAGATGG TGACTTCATC
  TCAGGAGAGA CGATCACATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323871531	CHEV_12_3234462	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220987849					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:3284462 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4353	CpG island 4353	463 bp proximal
Gm60416	predicted gene, 60416	within coordinates
Rab10os	RAB10, member RAS oncogene family, opposite strand	1329 bp upstream
Rr265316	regulatory region 265316	338 bp proximal
Tssr112476	transcription start site region 112476	1027 bp upstream
Tssr112477	transcription start site region 112477	1272 bp upstream
Tssr112478	transcription start site region 112478	1340 bp upstream
Tssr115578	transcription start site region 115578	828 bp downstream