rs220996629 SNP Detail

Summary

• ID
  rs220996629
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148513179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTACAATC CAGAATTGGA
  GGACACACCT GTGATCCAGA TCTTGAGGCT GGAAGACACA AGTTTCTAAC CTGCATCTTG
  GCATGGAGAT TTTGGGGCAT AGTGGCCATG AAAAGTTTAG GCTAAACAAG GTAGTACACA
  CCTTTAATGC CAGGAGATTG AGGCAAGGAG AACCCTGACT AATATGGGGG TGGTGGAATG
  R
  TGGAGGAGGG GGAGGGGGAG GGGAGAGAAA GAGAGAGAGA GGGGAGGGGA AGGGGAGAGA
  AAGAGGGAGA GGGGGGAGGG GTGGAGGAGA GGAAGGGGAG AGGGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGATTCTATC CTCTAGAGAA CCTTGACGAA TACGCTCAAC
  TGTGTCAGTG GCCAGTCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356077468	MGP_WTSI_2_148496995	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220996629					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356077468	MGP_WTSI_2_148496995	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148513179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12399	CpG island 12399	1122 bp proximal
Nxt1	NTF2-related export protein 1	1356 bp upstream
Rr397374	regulatory region 397374	1128 bp upstream
Rr566945	regulatory region 566945	852 bp proximal
Rr566946	regulatory region 566946	1226 bp proximal
Rr566947	regulatory region 566947	1378 bp proximal
Tssr20647	transcription start site region 20647	1375 bp upstream