rs220996759 SNP Detail

Summary

• ID
  rs220996759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166904848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAGGAAGA GGAGGCCGCG
  CAGGACGAGG AGGCGGTGCC GCGGGCTCCA GCGAGAGGCC GGGCTCGCCT GCGCCCCCGC
  CCTCGGGGCG GGCGGAAGGG CGGCGTCGCC TCAGCGCCCG CGGTAGCGGC GGCGGCTGGA
  CTGGCGGCTC CCCGCGGGCG CGGCGGAGGG GAGGGCGCGG CGGGGGGCGG GTTGACTGCG
  Y
  CCCGGGCGGC CGCAGGTCTC GGCTGGCCCC GGAGCCAGGG GGACGCGGCG GGCGGCTCGT
  GCGTGCCAAG CGCGACATGG CGCGGAAGCC GAGAAGCCCC GGAGGCCCAG TGAGCACGGG
  GAGGGGCTAG ACACTGGCTG GACAACCATT AGCTAGCTGG GGCCGGGCGG CTCGGGGACT
  ACATTTCCCA GGACGCCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss356497155	MGP_WTSI_2_166888428	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs220996759					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356497155	MGP_WTSI_2_166888428	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166904848 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12730	CpG island 12730	within coordinates
Gm25878	predicted gene, 25878	545 bp upstream
Gm56406	predicted gene, 56406	88 bp upstream
Gm75600	predicted gene, 75600	1815 bp downstream
Rr397500	regulatory region 397500	202 bp upstream
Rr570439	regulatory region 570439	1038 bp distal
Rr570440	regulatory region 570440	within coordinates
Rr570441	regulatory region 570441	77 bp proximal
Rr570442	regulatory region 570442	1427 bp proximal
Rr570443	regulatory region 570443	1630 bp proximal
Rr570444	regulatory region 570444	1694 bp proximal
Tssr21787	transcription start site region 21787	1639 bp downstream
Tssr21788	transcription start site region 21788	1626 bp downstream
Tssr21789	transcription start site region 21789	74 bp downstream
Tssr21790	transcription start site region 21790	285 bp upstream
Tssr27739	transcription start site region 27739	1852 bp upstream
Tssr27740	transcription start site region 27740	323 bp upstream
Tssr27741	transcription start site region 27741	204 bp upstream
Tssr27742	transcription start site region 27742	183 bp upstream
Tssr27743	transcription start site region 27743	55 bp upstream
Tssr27744	transcription start site region 27744	53 bp downstream
Zfas1	zinc finger, NFX1-type containing 1, antisense RNA 1	6 bp upstream
Znfx1	zinc finger, NFX1-type containing 1	within coordinates