rs220996852 SNP Detail

Summary

• ID
  rs220996852
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40274201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccttatctc aaagaaaaaa ggggaaaagt
  gatagagcaa ggtaccagat gtcttcctct gcctctgtgc acaaacTTGA GCGctctctc
  tctctctctc tctctctGac acacacacac acacacacac acacacacac acacacacac
  R
  TCAGTACTTA GTAATTAGAA TATTCTAATT ATATTGAGTG AATTATAAAT ACATCTGTCT
  AGCTATAATA GACATATAAT GCTCTCAACA ATATTAGCCC AAATCCTAAG TGATTACCTC
  TGAGGAGTGA AATTATGATT GATGGTTCTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322915575	CHEV_9_40170490	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220996852					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40274201 () rs orientation: forward

Symbol	Name	Function Class
Gm48114	predicted gene, 48114	312 bp downstream
Gm68184	predicted gene, 68184	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr200102	regulatory region 200102	1400 bp proximal
Rr200103	regulatory region 200103	2000 bp proximal