rs221000260 SNP Detail

Summary

• ID
  rs221000260
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167225348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTAGTCTAC GACAAGAGCC
  ACCAAGAGCT GCTATCTCTT CTTCATCTCA GCACAGCCTC TTCTCTAGCT ACAGGCCGGT
  GGACCTCTGT GTTCTAGCCA ACATCCTAAA CTCACTGTCA TCTCCCCCAA GATGTTTATA
  GATGGAAACG ATCATGTTAG CAAGGGGGGC GGGGAATGAA AGACGGCAGG AGGGGGAAAC
  R
  ACCATGTTAG CGGGGGTGGG GGGGGGGATG AAAGAAGGCA GGAGGGAGAA GAAAATGAAG
  ATGCTTTAAT GCTAGCACTC AGAAGGCTGA AAGTTCAAGG CCAGCCTGCA ATACACAGCG
  AGTTCCTGTC AGCCAGAGCT ACACAGTAAG ACCCTGTCTA AAATATAAAG TCGCCTAGCA
  CCCGAAGGAA CTAGAAGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss356504128	MGP_WTSI_2_167208928	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs221000260					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356504128	MGP_WTSI_2_167208928	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167225348 () rs orientation: forward

Symbol	Name	Function Class
Rr397506	regulatory region 397506	288 bp upstream
Rr570568	regulatory region 570568	1337 bp distal
Rr570569	regulatory region 570569	28 bp proximal
Tssr768	transcription start site region 768	1424 bp downstream
Tssr21803	transcription start site region 21803	1530 bp downstream
Tssr21804	transcription start site region 21804	634 bp upstream
Tssr21805	transcription start site region 21805	656 bp upstream
Tssr27773	transcription start site region 27773	131 bp downstream