rs221004412 SNP Detail

Summary

• ID
  rs221004412
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35021192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTTCCAGA CACTTCATTT TACCTCACCA AGTCTTAGGG
  GCCCGCCATG CATCAGAAGA GATTAGCCTC AACAACTGGG AGCATGTAAA GTGGATGGGC
  W
  GAAGAAAAGC AAGGGGTGTG TGTGTGTGTG GCAGGGAGGG GGTTCAGGAG TGAGAAAATC
  AGAGGCACAC TTGAGGCTAG GCCCCTGCAC GGTCCCTTC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322899070	CHEV_9_34917481	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221004412					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35021192 () rs orientation: forward

Symbol	Name	Function Class
Rr383192	regulatory region 383192	1448 bp upstream
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates