rs221004596 SNP Detail

Summary

• ID
  rs221004596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30825486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCTTGTG TCCCACCACA
  CACTAACTGT ATAAGTCATG TCACCAACTT TAGCTCTGGG TCTTTTCCTT GTCTCCCCAA
  CCCCCAACCT CCTGATCTCT TAGTCTTCAA GGCTTCTGGT TCACCTTCCC GTTTGCTCCA
  GTCTCCCCCA TGTTTATTCC TCCTAAAGGT CTCTGAAGAT CCCAGCAGGG CTGTATTCCG
  Y
  CGTTTTCCCA CCACTGTATG TCTCGCCATT ACTATTACTG TTGTTGTTTT AAACTCCATC
  TGGCAGGCAT TCTGTTCCTG GGACTGCCTC TCTATCTCCA TCCCTTCCTG GTCTCTCCAG
  ATCTTTCTGC TGCTCTCAAG TTTCTCTGTT CCTGGCTCCG GTTCCTAACT CTCTCCCTCC
  AATGTCCCTG TCTGCCCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322139527	CHEV_7_31911080	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221004596					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30825486 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	636 bp distal
Cpgi18837	CpG island 18837	133 bp proximal
Rr645025	regulatory region 645025	within coordinates
Rr645026	regulatory region 645026	773 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	within coordinates
Tssr71935	transcription start site region 71935	655 bp downstream
Tssr71936	transcription start site region 71936	698 bp downstream
Tssr71937	transcription start site region 71937	860 bp downstream
Tssr71938	transcription start site region 71938	889 bp downstream
Tssr71939	transcription start site region 71939	932 bp downstream
Tssr71940	transcription start site region 71940	1103 bp downstream