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rs221007031 SNP Detail
Summary
  • ID
    rs221007031
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr11:69300200 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GGTAGAAATC TCGCAATCAG
CAAATCCAGC ACCCAGGCCC TCCCGCGCCT CTATCAGAAT GCTCCACCTC CAGCGCCTGA
CCCCGTCCTA TATCATGGTC AAGTCCCCAG TCTCATACCA AGTTCCTCCA GCTCCTCCAC
TTTCCCCGGC TCTGAGTCTT CAGTATCGGT CGACCCCCTC AGCCAGTTCC CCCAGCCCTC
Y
AACTTCTGGG AAGCTGCGCA CCGTGGAGTG GCGGCCCCTC TCGCGTGGCT CCTGTATCCT
CTGTGCCCTT TCCCTGCCGG GGCCACGCGG TTCCCCACGG CCCACGTGGC CCCCACCCCC
CCCAAGGGAG GGGGGATTTC GGGGGTTGCC CGTGACGTGG CTACTTGCGC AGCGGAAGCG
GTGTGTGTAA GGGGGGGGGG                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss383783467 MGP_WTSI_11_69222876 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs221007031 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss383783467 MGP_WTSI_11_69222876 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:69300200 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi3128 CpG island 3128 within coordinates
Gm72923 predicted gene, 72923 1944 bp upstream
Gm72933 predicted gene, 72933 380 bp downstream
Kdm6b KDM1 lysine (K)-specific demethylase 6B within coordinates
Rr247028 regulatory region 247028 within coordinates
Rr369256 regulatory region 369256 500 bp upstream
Rr402670 regulatory region 402670 478 bp downstream
Rr402671 regulatory region 402671 within coordinates
Tssr3543 transcription start site region 3543 650 bp upstream
Tssr102456 transcription start site region 102456 430 bp downstream
Tssr102457 transcription start site region 102457 70 bp downstream
Tssr102458 transcription start site region 102458 300 bp upstream
Tssr102459 transcription start site region 102459 320 bp upstream
Tssr102460 transcription start site region 102460 353 bp upstream
Tssr102461 transcription start site region 102461 396 bp upstream
Tssr102462 transcription start site region 102462 424 bp upstream
Tssr102463 transcription start site region 102463 1177 bp upstream
Tssr102464 transcription start site region 102464 1451 bp upstream
Tssr102465 transcription start site region 102465 1570 bp upstream
Tssr102466 transcription start site region 102466 1727 bp upstream
Tssr102467 transcription start site region 102467 1945 bp upstream
Tssr102468 transcription start site region 102468 1981 bp upstream
Tssr108662 transcription start site region 108662 1754 bp upstream
Tssr108663 transcription start site region 108663 1725 bp upstream
Tssr108664 transcription start site region 108664 1543 bp upstream
Tssr108665 transcription start site region 108665 812 bp upstream
Tssr108666 transcription start site region 108666 214 bp upstream
Tssr108667 transcription start site region 108667 18 bp downstream
Tssr108668 transcription start site region 108668 39 bp downstream
Tssr108669 transcription start site region 108669 54 bp downstream
Tssr108670 transcription start site region 108670 173 bp downstream
Tssr108671 transcription start site region 108671 510 bp downstream
Tssr108672 transcription start site region 108672 994 bp downstream
Tssr108673 transcription start site region 108673 1022 bp downstream
Tssr108674 transcription start site region 108674 1066 bp downstream
Tssr108675 transcription start site region 108675 1233 bp downstream
Tssr108676 transcription start site region 108676 1278 bp downstream
Tssr108677 transcription start site region 108677 1322 bp downstream
Tssr108678 transcription start site region 108678 1338 bp downstream
Tssr108679 transcription start site region 108679 1637 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory