TTGAGAAGAG ACGCAGGGTG GGGAGCAGAG AGATAACCCC CTCCCAAGCC AAGCACCCCA TGGAGGAGGG GGGGAGGAGG AGGGGAAGGA GGAGGGAAGC TCTCTTACGA GCCCCCTAGC CCTAGATGGA CCAGCACCTT GCACCCTCTG AGGGACCCCA ATCAGCTCCC CTAAGGAGCC ACAAATAGCA GCTCCTCAAG S AACTTGCAAA AATCAATGAG AAATGCGCTT GGGGGATGGG TGCCCACTAC CTGATCTCAA GAAATCAGTA ACACCCCACC CCCACCCCAC CCAGAGCTTG CCAAACGGAG ACTGAGAGCT TTTAAGGGTC GAATTGTAAT TCTTTTCCCA ATTCAGGTGG CCAGGAAGAG GTTTTCTGGT TCTCTCTTTT GAATATTCCC S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss366510603 | MGP_WTSI_5_122551258 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | C | G | G | G | G |
SNP Consensus Information | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs221017247 | SNP | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | G | C | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss366510603 | MGP_WTSI_5_122551258 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/G |
Location: Chr5:122239312 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Myl2 | myosin, light polypeptide 2, regulatory, cardiac, slow | within coordinates | ||||||
Rr124298 | regulatory region 124298 | within coordinates | ||||||
Rr407055 | regulatory region 407055 | within coordinates | ||||||
Tssr48619 | transcription start site region 48619 | 442 bp downstream | ||||||
Tssr48620 | transcription start site region 48620 | 398 bp downstream | ||||||
Tssr48621 | transcription start site region 48621 | 291 bp downstream | ||||||
Tssr48622 | transcription start site region 48622 | 263 bp downstream | ||||||
Tssr48623 | transcription start site region 48623 | 90 bp downstream | ||||||
Tssr48624 | transcription start site region 48624 | 72 bp downstream | ||||||
Tssr48625 | transcription start site region 48625 | 528 bp upstream | ||||||
Tssr48626 | transcription start site region 48626 | 1401 bp upstream | ||||||
Tssr48627 | transcription start site region 48627 | 1421 bp upstream | ||||||
Tssr48628 | transcription start site region 48628 | 1599 bp upstream | ||||||
Tssr48629 | transcription start site region 48629 | 1647 bp upstream | ||||||
Tssr48630 | transcription start site region 48630 | 1721 bp upstream | ||||||
Tssr48631 | transcription start site region 48631 | 1898 bp upstream | ||||||
Tssr48632 | transcription start site region 48632 | 1919 bp upstream | ||||||
Tssr53075 | transcription start site region 53075 | 1476 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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