rs221018956 SNP Detail

Summary

• ID
  rs221018956
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30746066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGCCGCA CAAGGCCGGC
  GTGCAGTGGC GCTTCGCCGG CTCCTTCTAC TTCGCCATCA CCGTCATCAC CACCATCGGT
  AACTACACTC GCCGCGCCGG CGGGGACGGG GGCGGGGACC TGGGATGCTG GGGAGCCGCC
  CGCGGCTGAG GGGTCCCTGC GGAGCGGGGC GGGTCGCCGA ACCCGCGCGC TCCCAGTGGC
  M
  GGGGCTCAGC CCGGTGTGTC TGCTCTGCGG GAACCCCTGA CTTCGACCTG TCTCCAGTCC
  GGCCAGCCCT AAGTTGGCCT TGCCGGGCTG TGCGAGGACC CCAGGGGACT TAAGTGTGTG
  AGAGGGACAG GAGCGGCCGG CCGAGGCTCG GGAGGAGGGG TGTGGCCGGG CTAGGCCCTG
  GGGCTGGGCA TCCAGAGTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364424462	MGP_WTSI_5_30891095	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221018956					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364424462	MGP_WTSI_5_30891095	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30746066 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15680	CpG island 15680	within coordinates
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Gm9899	predicted gene 9899	103 bp upstream
Kcnk3	potassium channel, subfamily K, member 3	within coordinates
Rr124994	regulatory region 124994	within coordinates
Tssr45584	transcription start site region 45584	1316 bp downstream
Tssr45585	transcription start site region 45585	671 bp downstream
Tssr45586	transcription start site region 45586	551 bp downstream
Tssr45587	transcription start site region 45587	537 bp downstream
Tssr45588	transcription start site region 45588	502 bp downstream
Tssr45589	transcription start site region 45589	1334 bp upstream
Tssr50495	transcription start site region 50495	243 bp upstream
Tssr50496	transcription start site region 50496	16 bp downstream
Tssr50497	transcription start site region 50497	38 bp downstream