rs221021490 SNP Detail

Summary

• ID
  rs221021490
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4877295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGTGTTTT CTTTTAAAGT CACAAAGAAA
  AGACCTAACA GTTTGACTTA AATATAGTGG CATTgctggg tgtggtggca aacacactca
  ggaggtagag ttaggagttt gaggcctgcc tggtctgcaa tgtgagttcc aggacaacca
  M
  ggctacacag agaaaccatg tatcgaaaaa gcaaaaAATA TATAGAGGCA TAAGCCTTGT
  GAATCACATT ACTACCATTT TGGGGGAGGG TTATCAATTT AACATTTTTG AGAATGTTTA
  AACTTTTCAA TATTTAAGGG CAAGACTGAT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319612491	CHEV_1_4797153	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221021490					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4877295 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9	CpG island 9	369 bp proximal
Gm37988	predicted gene, 37988	820 bp upstream
Gm70766	predicted gene, 70766	192 bp downstream
Lypla1	lysophospholipase 1	751 bp upstream
Rr407434	regulatory region 407434	203 bp proximal
Rr407435	regulatory region 407435	648 bp proximal
Rr407436	regulatory region 407436	1023 bp proximal
Tssr5801	transcription start site region 5801	570 bp upstream
Tssr5802	transcription start site region 5802	794 bp upstream
Tssr5803	transcription start site region 5803	1174 bp upstream
Tssr10888	transcription start site region 10888	588 bp downstream
Tssr10889	transcription start site region 10889	646 bp downstream