rs221030996 SNP Detail

Summary

• ID
  rs221030996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108638430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGCGCTG AGTTTCCAAG
  AAAAGTTTGC TTGTTTCAAG GTTGGCTGGG GGGTTCAAGA TGAGATGAGC TCATTGCCAC
  AAATGAGTGA CTTGGGAAAG AAGGGGCAGA GAAGGTGAAT CTGGGTGCGT CTCTGCGCCC
  TCGCAGAATT TTTCCCCCCT GCTACCGGTT GGGAAGGAAG GGAGGAAGCT TCGTTCCCTT
  Y
  CCCGGGCACC CATTGCTTCC ATGTATTCCA TGCAGGAAAC TTACAAACTG CCGCACCGGC
  TGATTGAGAA AAAGAGACGT GACCGGATTA ACGAGTGCAT TGCCCAGCTG AAGGATCTCC
  TACCCGAACA TCTCAAACTT ACTGTAAGTG AGAAGCTGGC TGCGCTCCAA CCCAGTTCTT
  CTGCCCAGAG GGCGGATGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369592113	MGP_WTSI_6_108611463	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221030996					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369592113	MGP_WTSI_6_108611463	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108638430 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	535 bp upstream
4833447P13Rik	RIKEN cDNA 4833447P13 gene	1929 bp upstream
Bhlhe40	basic helix-loop-helix family, member e40	within coordinates
Cpgi17812	CpG island 17812	within coordinates
Gm17055	predicted gene 17055	1876 bp downstream
Rr399817	regulatory region 399817	113 bp upstream
Rr636155	regulatory region 636155	1532 bp distal
Rr636156	regulatory region 636156	585 bp distal
Rr636157	regulatory region 636157	724 bp distal
Rr636158	regulatory region 636158	45 bp distal
Rr636159	regulatory region 636159	134 bp proximal
Tssr58071	transcription start site region 58071	1802 bp downstream
Tssr58072	transcription start site region 58072	1023 bp downstream
Tssr58073	transcription start site region 58073	972 bp downstream
Tssr58074	transcription start site region 58074	935 bp downstream
Tssr58075	transcription start site region 58075	787 bp downstream
Tssr58076	transcription start site region 58076	682 bp downstream
Tssr58077	transcription start site region 58077	603 bp downstream
Tssr58078	transcription start site region 58078	278 bp upstream
Tssr58079	transcription start site region 58079	521 bp upstream
Tssr58080	transcription start site region 58080	870 bp upstream
Tssr58081	transcription start site region 58081	1301 bp upstream
Tssr58082	transcription start site region 58082	1650 bp upstream
Tssr62391	transcription start site region 62391	1646 bp upstream