rs221033006 SNP Detail

Summary

• ID
  rs221033006
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:158223579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCCTTTA TTTCCAGGAC
  TTGGGTGGCA AAGGTGGGTG GATCTCTGAG TTCGAGGCCA GCCTGGTCTA CAGAGTGAGT
  CCAGGTCAGC CAGGACTACA CAGAGAAATC TTCTGTCTCA AATAAACAAA ACAAAACAAA
  AAATAAATAA TTTAAAAAAA AGATGTCACG TGTAGTCAAT TATCTTTATG GAAAATGTCA
  Y
  GACTTAAGCT TTATTATGTT AAACTACCTG GTATCAGACT CTTGAAGTTT GAACCAACAC
  TTAGCCGGGC GATGGTGGCG CACGCCTTTA ATCCCAGCAC TTGGGAGGCA GAGACAGGTG
  AATCTTTGAG TTAGAGGCTA GCCTGGTCTA CCGAGTGAGT CCGGGACAGC CAGGATTACA
  CAGAGAAACC CTGTCTCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356281249	MGP_WTSI_2_158207395	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221033006					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356281249	MGP_WTSI_2_158207395	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158223579 () rs orientation: forward

Symbol	Name	Function Class
Gm25129	predicted gene, 25129	1993 bp downstream
Rr397444	regulatory region 397444	1578 bp downstream
Rr568752	regulatory region 568752	1488 bp distal
Rr568753	regulatory region 568753	1732 bp distal
Rr568754	regulatory region 568754	1694 bp distal
Snhg11	small nucleolar RNA host gene 11	within coordinates
Tssr21317	transcription start site region 21317	261 bp downstream
Tssr21318	transcription start site region 21318	511 bp upstream
Tssr21319	transcription start site region 21319	910 bp upstream
Tssr21320	transcription start site region 21320	949 bp upstream
Tssr21321	transcription start site region 21321	1041 bp upstream
Tssr21322	transcription start site region 21322	1186 bp upstream
Tssr21323	transcription start site region 21323	1233 bp upstream
Tssr21324	transcription start site region 21324	1265 bp upstream
Tssr21325	transcription start site region 21325	1305 bp upstream
Tssr21326	transcription start site region 21326	1327 bp upstream
Tssr21327	transcription start site region 21327	1376 bp upstream
Tssr21328	transcription start site region 21328	1414 bp upstream
Tssr21329	transcription start site region 21329	1427 bp upstream
Tssr21330	transcription start site region 21330	1449 bp upstream
Tssr27228	transcription start site region 27228	1542 bp downstream