rs221034852 SNP Detail

Summary

• ID
  rs221034852
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:31196696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACCATGGA AAAACATCCT
  ATAAGTAAAA TCTATGATTA AATTGCTATT TTTCTGTTGG TTCACACTTT TCCGTCTTTA
  TAAGGAAAAC GGGGTTGGCA GAATTGTGGA AAAAGGATAA GAAAACACTA ACTCAGTAAC
  TGAGGAGTGG GATGGGAGAG GACCAACATT CCGGCCTGGC CTTGATTATC CGTCTCTCTC
  M
  ATCACTTATG AATGCATTAG GTCTCCCTCT AATTCTAACA CCCATCCTTA TGGCCTTCTA
  ACCTCAAGTC TAATTCTTTC ATCCTTTTAA CCCTCTTTTG CCTGGACCGC CCAGCTCAGG
  CTCTTTGCTT ATGTACCCAG CTCAGGCCTT CCCAAATACT TAACCCCACC ACCACCAGCA
  GCAGCAGCAG CAGGAAGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367847434	MGP_WTSI_6_31169761	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221034852					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367847434	MGP_WTSI_6_31169761	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:31196696 () rs orientation: forward

Symbol	Name	Function Class
2210408F21Rik	RIKEN cDNA 2210408F21 gene	590 bp upstream
Cpgi17267	CpG island 17267	970 bp distal
Cpgi17268	CpG island 17268	537 bp proximal
Lncpint	long non-protein coding RNA, Trp53 induced transcript	1287 bp upstream
Rr379139	regulatory region 379139	within coordinates
Rr627939	regulatory region 627939	1756 bp distal
Rr627940	regulatory region 627940	562 bp distal
Rr627941	regulatory region 627941	within coordinates
Rr627942	regulatory region 627942	709 bp proximal
Rr627943	regulatory region 627943	899 bp proximal
Rr627944	regulatory region 627944	1682 bp proximal
Tssr55458	transcription start site region 55458	582 bp upstream
Tssr55459	transcription start site region 55459	639 bp upstream
Tssr55460	transcription start site region 55460	671 bp upstream
Tssr60179	transcription start site region 60179	1374 bp upstream
Tssr60180	transcription start site region 60180	1321 bp upstream
Tssr60181	transcription start site region 60181	1296 bp upstream
Tssr60182	transcription start site region 60182	1276 bp upstream
Tssr60183	transcription start site region 60183	1047 bp upstream
Tssr60184	transcription start site region 60184	716 bp upstream
Tssr60185	transcription start site region 60185	476 bp downstream
Tssr60186	transcription start site region 60186	526 bp downstream
Tssr60187	transcription start site region 60187	538 bp downstream