rs221043065 SNP Detail

Summary

• ID
  rs221043065
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:190710748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCTGGTGGC GAGGCTCACG
  GGCCGCGCGT GGCTGCTCCG GGATCGGGTG CCTTTGGTGA TTTTGGGGTG GGGGCAGCGG
  TGAGTGTCGG CGGCAGAGCC GGTCATGATG AGGGGCACAC GGCAAGGGGG CGGAGGACGC
  CGGCACGCCG GGGATCAGGG CCCCGCGGGA GGTTGGGGTG GCCTTTAACT CTCGCGGCCG
  Y
  AGGACACACG AAGGGAACCC CGCTCACCGA CCGGGCCTGA AAGCAGTGGA AACAGCAGAC
  ACTGCAGCTC AATAAGACAG GCATGGGGGT TCCCGCCTCG CTGCCCCAGA CCCACCCTTC
  AGGACTAACG CGAGCTTCCA GCCCCGCCGA TTACCTAGCA AGGCGGCTGG AAAGACGCCA
  CGAAGCCTCA CACCCAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320194439	CHEV_1_192802430	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221043065					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190710748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1214	CpG island 1214	within coordinates
Tssr15741	transcription start site region 15741	403 bp downstream
Tssr15742	transcription start site region 15742	593 bp downstream
Tssr15743	transcription start site region 15743	609 bp downstream
Tssr15744	transcription start site region 15744	632 bp downstream
Tssr15745	transcription start site region 15745	644 bp downstream
Tssr15746	transcription start site region 15746	710 bp downstream
Tssr15747	transcription start site region 15747	729 bp downstream
Vash2	vasohibin 2	within coordinates