rs221049388 SNP Detail

Summary

• ID
  rs221049388
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:8896003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAGGAAA AAAAGTTCTG
  AAATTTTGTT TTGTATGATA GGGTGACTAG ATAATTCCTA AATGGTTTTT ACAGAGCTAA
  ATGAAAGGAG TTTTAAATGT TTTTATTATG ATGTAACATT GAAACAGAAA CATAGTTACT
  GGTAGGAACA TAGTATTTTC TTTTGTGAGT TTTTTTTTAT TGAATATATG TTGAAACTAT
  W
  TATTGTTCAG CAAAGAGAAA CAGTTTGTGT AATAGGACAG GGTTCCAGGT AGCCTAGGCT
  GACTATATTT CTTTTCTCCC TTTCCCTTTC TTCCTTTCTT TCTTTCTTTC TTTCTTTCTT
  TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTTCCTT TCTTCCTTTC TTCCTTTCTT
  CCTTTCTTCC TTTCTTCCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401710276	MGP_WTSI_19_8993129	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221049388					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401710276	MGP_WTSI_19_8993129	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:8896003 () rs orientation: forward

Symbol	Name	Function Class
B3gat3	beta-1,3-glucuronyltransferase 3	1737 bp upstream
Cpgi10585	CpG island 10585	1446 bp proximal
Ganab	alpha glucosidase 2 alpha neutral subunit	1967 bp downstream
Gm36629	predicted gene, 36629	298 bp downstream
Rr394095	regulatory region 394095	440 bp downstream
Rr543846	regulatory region 543846	769 bp proximal
Rr543847	regulatory region 543847	1245 bp proximal
Rr543848	regulatory region 543848	1746 bp proximal
Tssr154878	transcription start site region 154878	1719 bp upstream
Tssr154879	transcription start site region 154879	1793 bp upstream
Tssr154880	transcription start site region 154880	1822 bp upstream
Tssr154881	transcription start site region 154881	1857 bp upstream