rs221052551 SNP Detail

Summary

• ID
  rs221052551
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86399435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGTACAC TTTTGTTTAA
  TGTTTTGCCT GCACTGTCCA AAGAAGCCAG AAGAGGGCGT CAGATCCCCT GAAACTGGAG
  TTCTGGATTG TTGGCAGCTA CCACGTGGTT GGGTGCAAAT ATTCAAACCC GGGTTCCCCA
  GGAAGAGCAG CAAGTGCCTT TTTTTTTTTT TGGACAGGGT TTCTCTGTAT AGCCTTGGCT
  R
  TCCTGGAACT CACTTTGTAG ACCAGGCTGG CCTCGAACTC AGAAATCCGC CTCCCTCTGC
  CTCCCGAGTG CTGGGATTAA AGGCGTGCGC CACCACGCCC GGCAGCAGCA AGTGCTCTCA
  GCAAGTACTG AACCATTTCT CCAGACCCCC ATTTTGATTT TAAAGTCAGC CTTGGCTACA
  TAGCCAGTTT GGGGCCTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350370282	MGP_WTSI_1_88368288	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221052551					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350370282	MGP_WTSI_1_88368288	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86399435 () rs orientation: forward

Symbol	Name	Function Class
Cpgi508	CpG island 508	505 bp proximal
Gm41907	predicted gene, 41907	within coordinates
Rpl30-ps6	ribosomal protein L30, pseudogene 6	1946 bp upstream
Rr371652	regulatory region 371652	14 bp upstream
Rr396149	regulatory region 396149	914 bp downstream
Rr396150	regulatory region 396150	41 bp downstream
Rr414594	regulatory region 414594	137 bp distal
Rr414595	regulatory region 414595	984 bp proximal
Tssr7756	transcription start site region 7756	942 bp downstream
Tssr7757	transcription start site region 7757	1814 bp upstream