rs221054436 SNP Detail

Summary

• ID
  rs221054436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91345025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGGGCCGG CTTGGTTTAC
  TCAGTGGGTC TTGCTGTTGT TGTTTATTTT GTTTTTTTTA TAGTTTGGCC ATTAGTTAAA
  TAAGCCTACG AATTGGGACG TTCCCTCCCA TTGGAAGTGG TGTTGAGGAG TTAGTTGGTC
  CTCTGTCAGC ATCCCTGCAA AGGCCCTTAA GTTCCCTTTC TCCTTAAGGG CAGAGGAGCA
  Y
  AGGAGGATGA GTGGGTTACG CAGTTAACTT GTTCTCCTGG AGTCAGACAA AGACTTTAAA
  CCCTGGCTCT GATGTTCCCC ATTTTGCCTT GAGCAATCTG TGTCTGACAC ACCCACACAC
  ACAGGTCTCC TTTGGAGGAG AGCCTGCGAT TGTCTGAGAT GTCTGTGAAC TATGTGTTCA
  GAAGTTGATA GGCGTATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397323874	MGP_WTSI_16_91548382	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221054436					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397323874	MGP_WTSI_16_91548382	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91345025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8455	CpG island 8455	491 bp distal
Ifngr2	interferon gamma receptor 2	within coordinates
Rr325567	regulatory region 325567	within coordinates
Rr370130	regulatory region 370130	1933 bp downstream
Rr392125	regulatory region 392125	within coordinates
Tssr139407	transcription start site region 139407	1023 bp downstream
Tssr139408	transcription start site region 139408	864 bp downstream
Tssr139409	transcription start site region 139409	297 bp downstream
Tssr142093	transcription start site region 142093	497 bp upstream
Tssr142094	transcription start site region 142094	24 bp downstream
Tssr142095	transcription start site region 142095	150 bp downstream
Tssr142096	transcription start site region 142096	1607 bp downstream