rs221063543 SNP Detail

Summary

• ID
  rs221063543
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172334585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTCCAG GCCAGCCTAT
  CTTGTCACCA CTGGCAGGGC CTGATAATTG CCTCTCTCTC TCTCTCTCTT TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TGGGCTTACT AATGCATTCC TTCCCCCACA
  ACCATCAAAA CTGGACCAAC AAAAACCCTG GGACCAAAGT TGCCTCCCCA CAGCATCTTT
  Y
  CTGCTTTCCT GATCTCTTCT TTTAGTCCAT CCCTTGGCTA GGAGTCAGAG ATTCTGCCCC
  ATGGCCTGAT GCTGCACCGA CCCTTCCTTC TACAAGGAGG CCTCTCCTAC AGCTGTGGCT
  GCAGGGACTT AATTTATAGG GAGGGGCCTG TGGCTGTCAC TCCAGCCACA GCTGGGCTGT
  ACTTACCACA CGTCTGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352407707	MGP_WTSI_1_174437149	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221063543					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352407707	MGP_WTSI_1_174437149	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172334585 () rs orientation: forward

Symbol	Name	Function Class
Tagln2	transgelin 2	within coordinates
Tssr10219	transcription start site region 10219	1718 bp downstream
Tssr10220	transcription start site region 10220	1247 bp downstream
Tssr10221	transcription start site region 10221	1212 bp downstream
Tssr10222	transcription start site region 10222	1119 bp downstream
Tssr10223	transcription start site region 10223	751 bp downstream
Tssr10224	transcription start site region 10224	434 bp downstream
Tssr10225	transcription start site region 10225	395 bp downstream
Tssr10226	transcription start site region 10226	376 bp downstream
Tssr10227	transcription start site region 10227	314 bp downstream
Tssr10228	transcription start site region 10228	283 bp downstream
Tssr10229	transcription start site region 10229	233 bp downstream
Tssr10230	transcription start site region 10230	168 bp downstream
Tssr10231	transcription start site region 10231	158 bp downstream
Tssr10232	transcription start site region 10232	94 bp downstream
Tssr10233	transcription start site region 10233	59 bp downstream
Tssr10234	transcription start site region 10234	21 bp downstream
Tssr15226	transcription start site region 15226	122 bp upstream
Tssr15227	transcription start site region 15227	32 bp upstream