rs221070007 SNP Detail

Summary

• ID
  rs221070007
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:106553112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGGCCAG AAGAAGTTCT
  TGTACTCTCT GAGGAATAAT AAGACAACTG AGTAAACACT TAAGCCTCCC GCCTTTAGAT
  CATCTCCACC CCAGACCAAC AGTCCTGACA GAGATATTGT CCTCCACAAC AAACAAAACA
  AGGTAGATAC AGGCAACAGA AGTGTGTGAG AGACACTGAA TACTGTTGTC CGTCTCTCCA
  R
  AATCCAAACA GCCCAGCCTG GAGCCCAGGG GAAGGAAGTG GCAAAAATGG AAGTCACCAA
  CAACAACTTT AGCACACAGC GCCTAGCCCA GTCCCGGGAT GACTGGCAGC CAGGCAGCCC
  ATGCACTTAC TGTGGCAATG TTACCACCTC TTTTTGCAAA AAAAAGACTG AAACTAAGCC
  GTGGTAAAGG GCCTAGCATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375919893	MGP_WTSI_8_108350380	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221070007					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375919893	MGP_WTSI_8_108350380	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106553112 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20953	CpG island 20953	411 bp proximal
Ranbp10	RAN binding protein 10	Intron
Rr401097	regulatory region 401097	599 bp upstream
Rr669015	regulatory region 669015	1336 bp distal
Rr669016	regulatory region 669016	860 bp proximal
Rr669017	regulatory region 669017	1275 bp proximal
Tsnaxip1	translin-associated factor X (Tsnax) interacting protein 1	1251 bp upstream
Tssr79188	transcription start site region 79188	1241 bp upstream
Tssr79189	transcription start site region 79189	1273 bp upstream
Tssr79190	transcription start site region 79190	1290 bp upstream
Tssr82694	transcription start site region 82694	148 bp upstream
Tssr82695	transcription start site region 82695	710 bp downstream
Tssr82696	transcription start site region 82696	1113 bp downstream
Tssr82697	transcription start site region 82697	1137 bp downstream
Tssr82698	transcription start site region 82698	1162 bp downstream
Tssr82699	transcription start site region 82699	1200 bp downstream