rs221074382 SNP Detail

Summary

• ID
  rs221074382
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161077133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAAGATG CCACTTCATC
  TGCTTATTTA GTTGCTATTT AGGGACAAAG CCTCACTAAG TTGGCTTGGC CTTGAAGTTA
  GGATCTTCCC AACTGTCTCC TCAGCAGCTG GAATAAAACA GTTGCATCCA GATCTAGATC
  AATAAACAAT CCCTAAGATT CCCGCCCCCG ACTCTATAGT GTGGCTATCT TCACAGCACA
  Y
  GCGCTTTAGA TTCATATTTA TCTCTCATCC TTACAGATGA AGCGCTCCAG CAAGCCCTCA
  CATTTCCTGG GGGTGTGGGC TGCAGACAGG AATGGGAAGG AACACTGTGT AAATCGTTGG
  CAGTCTTGGA TAAATATTAA CACTAGATTT TGAGTGATGA GTCTGGCTGG CATGCTTATT
  TTTAGACTTT TCTCCTGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352143783	MGP_WTSI_1_163179694	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221074382					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352143783	MGP_WTSI_1_163179694	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161077133 () rs orientation: forward

Symbol	Name	Function Class
Cpgi926	CpG island 926	946 bp proximal
Gm70781	predicted gene, 70781	1175 bp upstream
Prdx6	peroxiredoxin 6	within coordinates
Rr372334	regulatory region 372334	within coordinates
Rr396460	regulatory region 396460	1486 bp upstream
Rr396461	regulatory region 396461	1947 bp upstream
Rr421775	regulatory region 421775	1018 bp distal
Rr421776	regulatory region 421776	689 bp proximal
Rr421777	regulatory region 421777	1570 bp proximal
Rr421778	regulatory region 421778	1593 bp proximal
Tssr14577	transcription start site region 14577	1321 bp downstream
Tssr14578	transcription start site region 14578	1565 bp downstream
Tssr14579	transcription start site region 14579	1578 bp downstream
Tssr14580	transcription start site region 14580	1590 bp downstream
Tssr14581	transcription start site region 14581	1939 bp downstream