rs221077739 SNP Detail

Summary

• ID
  rs221077739
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136494267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTC CTTCCTTCCT TCTTTTATTT
  W
  TTTATTTATT TTTTTTGAGT CAAGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	SM/J	ZALENDE/EiJ
ss918426729	MGP_WTSI_6_136517269	EVA_MGPV3	EVA_MGPV3	f	SNP	T	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NZB/BlNJ	PWK/PhJ	SM/J	ZALENDE/EiJ
rs221077739					SNP	T	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss918426729	MGP_WTSI_6_136517269	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136494267 () rs orientation: forward

Symbol	Name	Function Class
Atf7ip	activating transcription factor 7 interacting protein	1520 bp upstream
Cpgi18104	CpG island 18104	1332 bp proximal
Gm44140	predicted gene, 44140	within coordinates
Rr133547	regulatory region 133547	1134 bp proximal
Rr145858	regulatory region 145858	933 bp proximal
Rr400014	regulatory region 400014	1299 bp upstream
Rr400015	regulatory region 400015	1697 bp upstream
Tssr59315	transcription start site region 59315	1517 bp upstream
Tssr59316	transcription start site region 59316	1551 bp upstream
Tssr59317	transcription start site region 59317	1597 bp upstream
Tssr63803	transcription start site region 63803	1229 bp downstream
Tssr63804	transcription start site region 63804	1492 bp downstream
Tssr63805	transcription start site region 63805	1789 bp downstream