rs221092833 SNP Detail

Summary

• ID
  rs221092833
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69836310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGCCTCTG AGAAATTCAG
  AGAAGCCTCT TTCCAGAATA AGAGGGAACA CACTTTTGTC TTGTAATGAA CACCTTTGTC
  CAAGGACCTA AGCTTAGATT CCAACACTCA CAATAAATGC TGCCCGAGGG CAGCTGTCCA
  CCTGCAATCC CAGTACTAGA TCCTGGAGAG CACTGGCTAG CAATCCTAGT GAGACACTGT
  W
  TCCATATACA AGGGGGAAAA TGGTTGAAGA AGATGGCTAG TGTTAACCTT TGGCTTCCAA
  ATGCCACACA CACACACACA CACACACACA CACACACACA CACATTTATG CGCGCACACA
  TGAACACACA TATACAGATG CATATATAGC CCAAGAAAAC AGGACAATGG GTTAAAAATA
  CAAAATGAAA ACAAGCTGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386395804	MGP_WTSI_12_70890523	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221092833					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386395804	MGP_WTSI_12_70890523	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69836310 () rs orientation: forward

Symbol	Name	Function Class
4930512B01Rik	RIKEN cDNA 4930512B01 gene	808 bp upstream
Cdkl1	cyclin dependent kinase like 1	within coordinates
Cpgi4702	CpG island 4702	936 bp proximal
Rr265514	regulatory region 265514	within coordinates
Tssr116527	transcription start site region 116527	719 bp downstream
Tssr116528	transcription start site region 116528	738 bp downstream
Tssr116529	transcription start site region 116529	745 bp downstream
Tssr116530	transcription start site region 116530	1069 bp downstream
Tssr116531	transcription start site region 116531	1124 bp downstream
Tssr116532	transcription start site region 116532	1693 bp downstream
Tssr116533	transcription start site region 116533	1758 bp downstream
Tssr116534	transcription start site region 116534	1775 bp downstream
Tssr116535	transcription start site region 116535	1789 bp downstream
Tssr116536	transcription start site region 116536	1817 bp downstream