rs221097279 SNP Detail

Summary

• ID
  rs221097279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57552654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCGCAGC CCCAGGCGGG
  GAGGGAAGAA AGGCGGGGGA AGGGGGCGGG AGGGAGTCCG GGGGGGAGGA AACAATGTAG
  CCGGCGCGGC CCCGGCAGAG TTCCGCTTCC GAACGCGGCC ACGGAGGTTC GGTTTGGGGA
  CGTCGCGCCG CCGCCGGGGG GCCGCCCCGG GCGTTCGATC GCCGCTCGCA GGGCTTGCCT
  R
  AGCCCCACAC CCCGGAGGCT GGGCGGCCAG AGGCTGGCCA GGCGGGAGGG ACGGCTGGCC
  CGGGGACGGC CCCGACGGCG GCGCGGCCCG GGTTGGCCCT GCTCGGACCC CACCCCGGTG
  GGATTCCCCG GGGCAGGGCG CAGGGTGGCG CGGAAGCGCA AGGAAGGCAG CAGGCTCAGC
  GGCGGCGGCC AACCTCAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377693411	MGP_WTSI_9_57493178	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221097279					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377693411	MGP_WTSI_9_57493178	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57552654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21828	CpG island 21828	within coordinates
Csk	c-src tyrosine kinase	within coordinates
Rr679716	regulatory region 679716	134 bp proximal
Rr679717	regulatory region 679717	272 bp proximal
Rr679718	regulatory region 679718	321 bp proximal
Rr679719	regulatory region 679719	1224 bp proximal
Tssr85319	transcription start site region 85319	92 bp downstream
Tssr85320	transcription start site region 85320	422 bp upstream
Tssr89801	transcription start site region 89801	1131 bp upstream
Tssr89802	transcription start site region 89802	235 bp upstream
Tssr89803	transcription start site region 89803	191 bp upstream
Tssr89804	transcription start site region 89804	164 bp upstream
Tssr89805	transcription start site region 89805	61 bp downstream
Tssr89806	transcription start site region 89806	161 bp downstream
Tssr89807	transcription start site region 89807	190 bp downstream
Tssr89808	transcription start site region 89808	1339 bp downstream
Tssr89809	transcription start site region 89809	1375 bp downstream