rs221100988 SNP Detail

Summary

• ID
  rs221100988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31082536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGTGCCT CTGCACACCT
  AAGCTTGCCT GTTGTGCATA TGCATACCTA GGTTTTCTGG CTAGTTCTGC ACTGAGGAGC
  CAGGATGCCT TCTTGGGAGC TCTGCTGACA ACATATGTGA TTCTTGATTC AACTTTCTTT
  AACCCCTTCC ACCCCATTCT GTGGTACTGG GGGATCAAAC CCAAGACTTG CACATACTGG
  R
  CAACTGTTCT TTAAATAAGC TAGATATCAG TCCAAATGAA GGAGGATATA CCACTAAGTA
  TTTCCTGTTC CCTTTGTGAC AGTGCTAGAA ATAAACTGAA CCCAAGGCTT CAAACATGCT
  GCGCAGGAGC CCTGCTGCCA GTTTATAGTC TTAGCTCATG ATCAACAGTC TTAACTCTAG
  GAACCAGGCT TGCCCTTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889498	CHEV_9_30978825	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221100988					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31082536 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	within coordinates
Tssr88639	transcription start site region 88639	716 bp upstream
Tssr88640	transcription start site region 88640	701 bp upstream
Tssr88641	transcription start site region 88641	681 bp upstream
Tssr88642	transcription start site region 88642	658 bp upstream
Tssr88643	transcription start site region 88643	618 bp upstream