rs221102047 SNP Detail

Summary

• ID
  rs221102047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129143650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGATTCCA TGTTGTTGAG
  ACCCTCCCCC TTTTGTATTC TTTTAAATCT AAGAAAGCAA CCTGATTAGC TTCCTTTGGG
  CTTTGAACTT TCATTAAGAC CTGTACTATC CAAACCTCTT CATCTCCCCC TTTTACCCCC
  TTCCTTTGGT TATTCTACCT CCAAATGACT ACACAGTCCT CTTCCTGTCT ACATGGTCAC
  Y
  GTATTCTTCT ACTGTGCTTC TTCTCTAACT TCCCAGCTGA GCTCTCTGCT CTCTCTAGTG
  CTTTTGTTCT GGACTATTGT CTATTTAAGA AATATAAATG GCACCAGCAC CCTGCACCCT
  CTGAAAGCCT TTGGTGGCTT TCAACTGTAT ACCAAATGAC CAGGACCAAA AGCGCTCCGC
  TGTTACTTGC AGCTGGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355636702	MGP_WTSI_2_129127466	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221102047					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355636702	MGP_WTSI_2_129127466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129143650 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	within coordinates
Rr564905	regulatory region 564905	1169 bp distal
Tssr20111	transcription start site region 20111	1286 bp downstream
Tssr26199	transcription start site region 26199	1913 bp upstream
Tssr26200	transcription start site region 26200	1862 bp upstream
Tssr26201	transcription start site region 26201	1743 bp upstream
Tssr26202	transcription start site region 26202	1680 bp upstream
Tssr26203	transcription start site region 26203	1658 bp upstream
Tssr26204	transcription start site region 26204	1553 bp upstream
Tssr26205	transcription start site region 26205	1500 bp upstream
Tssr26206	transcription start site region 26206	1468 bp upstream
Tssr26207	transcription start site region 26207	1390 bp upstream
Tssr26208	transcription start site region 26208	1162 bp upstream
Tssr26209	transcription start site region 26209	1081 bp upstream
Tssr26210	transcription start site region 26210	964 bp upstream
Tssr26211	transcription start site region 26211	827 bp upstream
Tssr26212	transcription start site region 26212	784 bp upstream
Tssr26213	transcription start site region 26213	181 bp upstream
Tssr26214	transcription start site region 26214	1225 bp downstream
Tssr26215	transcription start site region 26215	1248 bp downstream