rs221112922 SNP Detail

Summary

• ID
  rs221112922
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83467561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCTGCTGA GGACCACCAT
  CACACACTTG GAGTCTAGGA TCTGCTCTAG ACTCATTTAT CCCCTTAGGT GACATGAGAT
  TTTTCTGGGA TCTTAAAAAA CAAAACAAAA CAAAAAAACC AAAAACTCTA TTGACTTGAA
  GCACAAACCC CTTTGGTGAC ACAAAGTCCC TTGAAGTGAA ATGAGGCTCC TAATAGTCCA
  Y
  ATTTATATAA ATGCCTGATT AAAGGACACA CTGAAGAAAA AACCATCAGG GATGTTGAGT
  GACATCCAGC AATGTATCAC TTTTTAAAAT CCATAATAAT CCTTTATCCC AAATATATCG
  AAGCCCAAAG ATTGTTGCTA AAGGATTGGG AATTTGCATT GTGCTAAGAC AAGACTACTA
  ATCCCTTATA TCATGTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384072552	MGP_WTSI_11_83390237	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs221112922					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384072552	MGP_WTSI_11_83390237	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83467561 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Rr452990	regulatory region 452990	1891 bp proximal
Tssr103716	transcription start site region 103716	1369 bp downstream
Tssr109682	transcription start site region 109682	1741 bp upstream
Tssr109683	transcription start site region 109683	1693 bp upstream
Tssr109684	transcription start site region 109684	1667 bp upstream
Tssr109685	transcription start site region 109685	1626 bp upstream
Tssr109686	transcription start site region 109686	1557 bp upstream
Tssr109687	transcription start site region 109687	1503 bp upstream
Tssr109688	transcription start site region 109688	1462 bp upstream
Tssr109689	transcription start site region 109689	1420 bp upstream
Tssr109690	transcription start site region 109690	1411 bp upstream
Tssr109691	transcription start site region 109691	1397 bp upstream
Tssr109692	transcription start site region 109692	1369 bp upstream
Tssr109693	transcription start site region 109693	1252 bp upstream
Tssr109694	transcription start site region 109694	825 bp upstream
Tssr109695	transcription start site region 109695	777 bp upstream
Tssr109696	transcription start site region 109696	212 bp downstream
Tssr109697	transcription start site region 109697	402 bp downstream
Tssr109698	transcription start site region 109698	1685 bp downstream
Tssr109699	transcription start site region 109699	1732 bp downstream
Tssr109700	transcription start site region 109700	1761 bp downstream
Tssr109701	transcription start site region 109701	1794 bp downstream
Tssr109702	transcription start site region 109702	1851 bp downstream
Tssr109703	transcription start site region 109703	1861 bp downstream
Tssr109704	transcription start site region 109704	1885 bp downstream