rs221114300 SNP Detail

Summary

• ID
  rs221114300
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:43157339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggacccagg ttcccttcct agcacccaca
  tcaggcaact cacaacctcc tcttactccg ttctagggac tttattgccc tctgacccct
  gtgggcgcct gcatatgcat ggtacataTG AACTGTTGTT GGCATACAGG CACAAAGGTA
  W
  AAGATAAATT CTTTCATAAA AATTAggtgc tggggagatg gctcagtggt taagtgcaca
  tactgttctt gcgaagggcc taagttcagt tcccagcacc aatattggaa actcacaagc
  acctgtgact ttagctccat agattcaata                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324327617	CHEV_13_43099232	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs221114300					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43157339 () rs orientation: forward

Symbol	Name	Function Class
Gm15809	predicted gene 15809	within coordinates
Gm61192	predicted gene, 61192	932 bp downstream
Phactr1	phosphatase and actin regulator 1	within coordinates
Rr388334	regulatory region 388334	57 bp upstream
Rr478223	regulatory region 478223	990 bp proximal